Algorithmic information dynamics of emergent, persistent, and colliding particles in the game of life

Authors: H. Zenil, N.A. Kiani, J. Tegnér
Kolmogorov-Chaitin complexity Cellular automata Algo-rithmic probability Algorithmic Coding Theorem Turing machines

Controllability, multiplexing, and transfer learning in networks using evolutionary learning

Authors: R. Ooi, C.-H. Huck Yang, P.-Y. Chen, V. Eguiluz, N. Kiani, H. Zenil, D. Gomez-Cabrero, J. Tegner
Controllability Multiplexing Evolutionary learning

Synthesizing new retinal symptom images by multiple generative models

Authors: Y.-C. Liu, H.-H. Yang, C.-H. Huck Yang, J.-H. Huang, M. Tian, H. Morikawa, J. Tegner
Age-Related Macular Degeneration (AMD) Machine learning Generative Adversarial Networks (GANs)

Auto-classification of retinal diseases in the limit of sparse data using a two-streams machine learning model

Authors: C.-H. Huck Yang, F. Liu, J.-H. Huang, M. Tian, H. Morikawa, I-H. Lin M.D., Y.C. Liu, H.-H. Yang, J. Tegner
Machine learning Retinal deseases Vascular disorders Auto classification Support vector machine Deep neural networks

A novel hybrid machine learning model for auto-classification of retinal diseases

Authors: C.-H. H. Yang, J.-H. Huang, F. Liu, F.-Y. Chiu, M. Gao, W. Lyu, J. Tegner, L. Kular Et Al.
Machine learning Retinal deseases Auto classification Support vector machine Deep neural networks

Learning functions in large networks requires modularity and produces multi-agent dynamics

Authors: C.H.H. Yang, R. Ooi, T. Hiscock, V. Eguiluz, J. Tegner
Large networks Multi-agent dynamics biological systems Machine learning

DNA methylation as a mediator of HLA-DRB1* 15: 01 and a protective variant in multiple sclerosis

Authors: L. Kular, Y. Liu, S. Ruhrmann, G. Zheleznyakova, F. Marabita, D. Gomez-Cabrero, T. James, E. Ewing, (...), Jesper Tegnér, L. Kular Et Al.
HLA DRB1 antigen DNA Methylation In vitro study Multiple sclerosis

An algorithmic refinement of maxent induces a thermodynamic-like behaviour in the reprogrammability of generative mechanisms

Authors: H. Zenil, N.A. Kiani, J. Tegnér
Second law of thermodynamics Reprogrammability Algorith- mic complexity Generative mechanisms

Building gene regulatory networks from single-cell ATAC-seq and RNA-seq using linked self-organizing maps

Authors: C. Jansen, R. Ramirez, N. El-Ali, D. Gomez-Cabrero, J. Tegner, M. Merkenschlager, A. Conesa, A. Mortazavi
Single-cell Gene Regulatory Networks Self-organizing maps RNA-seq

A decomposition method for global evaluation of shannon entropy and local estimations of algorithmic complexity

Authors: Zenil, Hernández-Orozco, Kiani, Soler-Toscano, Rueda-Toicen, Tegner
Algorithmic probability Algorithmic randomness Information content Information theory Kolmogorov-Chaitin complexity Shannon Entropy Thue-Morse sequence

Symmetry and correspondence of algorithmic complexity over geometric, spatial and topological representations

Authors: H. Zenil, N.A. Kiani, J. Tegnér
Algorithmic Coding Theorem Algorithmic probability Information content Kolmogorov-Chaitin complexity Molecular complexity Polyhedral networks Polyominoes Polytopes Recursive transformation Shannon Entropy Symmetry breaking Turing machines

A review of graph and network complexity from an algorithmic information perspective

Authors: H. Zenil, N.A. Kiani, J. Tegnér
Algorithmic information theory Algorithmic probability Algorithmic randomness Biological networks Complex networks Kolmogorov-Chaitin complexity

Time-resolved transcriptome and proteome landscape of human regulatory T cell (Treg) differentiation reveals novel regulators of FOXP3

Authors: A. Schmidt, F. Marabita, N.A. Kiani, C.C. Gross, (...), H. Wiendl, R. Lahesmaa, J. Tegnér
Regulatory T cells Treg iTreg FOXP3 T cell differentiation RNA sequencing (RNA-Seq) Data integration TGF-β

Overexpression of endothelin B receptor in glioblastoma: a prognostic marker and therapeutic target?

Authors: S. Vasaikar, G. Tsipras, N. Landázuri, H. Costa, (...), J. Tegner, K.-C. Yaiw, C. Söderberg-Naucler
Glioblastoma Endothelin B receptor Endothelin receptor antagonists

Algorithmic complexity and reprogrammability of chemical structure networks

Authors: H. Zenil, N.A. Kiani, M.M. Shang, J. Tegnér
Algorithmic information theory Algorithmic probability Causal path Causality Chemical compound complexity Information signature Kolmogorov-Chaitin complexity Molecular complexity Shannon Entropy

Symmetry and algorithmic complexity of polyominoes and polyhedral graphs

Authors: H. Zenil, N.A. Kiani, J. Tegnér
Algorithmic symmetry Geometric symmetry Kolmogorov-Chaitin complexity

Ab initio algorithmic causal deconvolution of intertwined programs and networks by generative mechanism

Authors: H. Zenil, N.A. Kiani, J. Tegner
Complex data Algorithmic probability

Unsupervised and universal data reduction and network sparsification methods by minimal algorithmic information loss

Authors: H. Zenil, N.A. Kiani, J. Tegnér
Data reduction Network sparsification Algorithmic information theory

Predictive systems toxicology

Authors: N.A. Kiani, M.M. Shang, H. Zenil, J. Tegnér
Toxicity Machine learning techniques Molecular mechanisms

Impact of genetic risk loci for multiple sclerosis on expression of proximal genes in patients

Authors: T. James, M. Lindén, H. Morikawa, S.J. Fernandes, S. Ruhrmann, M. Huss, M. Brandi, F. Piehl, M. Jagodic, J. Tegnér, M. Khademi, T. Olsson, D. Gomez-Cabrero, I. Kockum
Kappa-B activation RNA-SEQ data Functional variation Disease Variants Annotation Genome Association Autoimmune Leukocytes

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